nb-sdouglas

cadnano/


dsDNA pdb models

2015-11-21
Attachments:

Thinking about new slice view

Playing with PDB reference to think about new cadnano slice view design. Ideally an updated view will provide some information about relative angles positions of neighboring phosphates for both fwd and rev strands.

Starting Reference

From this view it is difficult to distinguish forward strand from the reverse strand.


Just the phosphates

Distinguishing fwd and rev

Pymol has a few color schemes that can be applied to chains.

http://www.pymolwiki.org/index.php/Spectrum

rainbow

rainbow

rainbow2 is less yellow in the middle

rainbow2